Comparison with other projects¶
We acknowledge the existence of projects with similar purposes. The table below compares some features across some of the existing projects. This table was mostly based on the existing documentation for each project. We understand that the field is rapidly evolving, and that this table might reflect the reality. If you notice inconsistencies, please let us know by opening an issue.
| Name | Website / Documentation | BIDS(*) | Framework | Tasks | Data dimension | Multichannel / Multilabel | Uncertainty | Transfer Learning | Pre-processing tools | Post-processing tools | User case examples | Multi-GPU data parallelism | Automatic Model evaluation | Input region of interest | Missing modality | Model performance comparison | Automatic hyperparameter optimisation | Pre-trained Models |
| ivadomed | https://ivadomed.org/en/latest/ | Yes | PyTorch | Segmentation, Detection | 2D, 3D | Both | Epistemic, Aleatoric | Yes | Yes | Yes | Yes | No | Yes | Yes (image) | Yes | Yes | Yes | Yes |
| monai | https://monai.io/ | No | PyTorch | Segmentation, Classification | 2D, 3D | Both | None | No | Yes | No | Yes | Yes | Yes | Yes (coordinates) | No | No | No | Yes |
| delira | https://delira.readthedocs.io/en/master/ | No | PyTorch and TensorFlow | Classification, Generation, Segmentation | 2D, 3D | None | None | Yes | No | No | Yes | Yes | No | No | No | No | No | No |
| MIC-DKFZ | https://github.com/MIC-DKFZ/medicaldetectiontoolkit | No | Torch | Detection | 2D, 3D | None | None | No | No | No | No | No | Yes | Yes (image) | No | No | No | No |
| ANTsPyNet | https://antsx.github.io/ANTsPyNet/docs/build/html/index.html | No | TensorFlow/Keras | Classification, segmentation,clustering, GAN, registration, super-resolution, autoencoder | 2D,3 D | Multilabel | None | No | No | No | Yes | No | No | No | No | No | No | No |
| DLTK | https://dltk.github.io/ | No | Tensorflow | Classification, segmentation, GAN, registration, super-resolution, autoencoder | 3D | Multilabel | None | Yes | No | No | Yes | No | No | No | No | No | No | No |
| MIScnn | https://github.com/frankkramer-lab/MIScnn | No | Tensorflow/Keras | Segmentation | 2D, 3D | Multilabel | None | No | Yes | Yes | No | Yes | Yes | No | No | No | No | No |
| niftytorch | https://niftytorch.github.io/doc/ | Yes | Torch | Classificication /segmentation | 3D | None | None | No | No | No | Yes | Yes | No | Yes | No | No | Yes | No |